R/Bioconductor framework for microbiome data science

Our community is rethinking microbiome data science in R/Bioconductor. We develop methods, data resources, and educational material for microbiome research based on the latest multi-assay data structures, i.e. the SummarizedExperiment class and its derivatives. This facilitates systematic integration and analysis of heterogeneous data across different omics. Feedback and new contributions are very welcome.

Resources

mia

Data analysis

miaSim

Simulation

miaTime

Time series analysis

miaViz

Visualization

Other independent packages

The package ecosystem is supported by many independent developers

Outreach

Publications, slides, presentations, posters, and other material