R/Bioconductor ecosystem for microbiome bioinformatics based on SummarizedExperiment.
Felix G.M. Ernst
Domenick C. Braccia
Hector Corrada Bravo
The full list of contributors varies over time, and is
identified through the individual repositories. Check each
individual package for acknowledgements, contact information
and references. Don't hesitate to contact us for feedback,
support, or feature requests.
R/Bioc microbiome ecosystem with SummarizedExperiment
We are envisioning to rethink microbiome research in R/Bioconductor.
This is an open source project developing R/Bioc methods,
benchmarking data, and educational material for microbiome research
based on the SummarizedExperiment class and its derivatives. New
contributions are very welcome. The current project brings together
the following key elements:
The project was formally introduced
Bioconductor Meeting (EuroBioC2020), and it is linked to the
European COST action network
on Statistical and Machine
Learning Techniques in Human Microbiome Studies.
For further background, see