Microbiome Analysis Dashboard

Origins

While attending workshops at EuroBioc2023, I got to play with iSEE.

iSEE

iSEE is a very nice app that lets you visualise SummarizedExperiment objects in an interactive way (Rue-Albrecht et al. 2018). However it had no support for 🦠🦠🦠.

iSEEtree

So we thought why not adding support for 🦠🦠🦠, and we developed iSEEtree to visualise TreeSummarizedExperiment objects in an interactive way (Benedetti et al. 2024).

Half-way there!

iSEEtree is very nice, but why not having a graphical user interface with full mia functionality, from importing data to plotting results?

miaDash

An app that translates the mia functionality to a graphical user interface.

Try the app

Visit miaDash at this address or by scanning the QR code below.

References

Benedetti, Giulio, Ely Seraidarian, Theotime Pralas, Akewak Jeba, Tuomas Borman, and Leo Lahti. 2024. “iSEEtree: Interactive Explorer for Hierarchical Data.” https://arxiv.org/abs/2412.02882.

Rue-Albrecht, Kevin, Federico Marini, Charlotte Soneson, and Aaron TL Lun. 2018. “iSEE: Interactive Summarizedexperiment Explorer.” F1000Research 7. https://doi.org/10.12688/f1000research.14966.1.