Group-wise comparisons

A number of methods for microbiota community comparisons have been proposed. For a recent benchmarking study, see Weiss et al. (2017). For a comprehensive example workflow, see Callahan et al. F1000 (2017).

Univariate comparisons

For individual taxa, diversity indicators etc.

Other methods, not implemented here (see Weiss et al. (2017) for a recent survey):

Multivariate comparisons

For community-level multivariate comparisons