Microbiome analysis • mia

Using the package

This project provides functions and workflows examples for analyses of microbiome data. The main class for working with microbiome data in this package is TreeSummarizedExperiment.

For examples of functionality, see the function reference page.

More information and example workflows are provided in the online manual Orchestrating Microbiome Analysis with Bioconductor.

Installation

Bioc-release

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("mia")

Bioc-devel

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("mia")