mia implements tools for microbiome analysis based on the
SummarizedExperiment, SingleCellExperiment and
TreeSummarizedExperiment infrastructure. Data wrangling and analysis
in the context of taxonomic data is the main scope. Additional functions for
common task are implemented such as community indices calculation and
summarization.
Author
Maintainer: Tuomas Borman tuomas.v.borman@utu.fi (ORCID)
Authors:
Other contributors:
Yang Cao [contributor]
Nathan D. Olson nolson@nist.gov [contributor]
Levi Waldron [contributor]
Marcel Ramos [contributor]
Héctor Corrada Bravo [contributor]
Jayaram Kancherla [contributor]
Domenick Braccia dbraccia@umd.edu [contributor]
Basil Courbayre [contributor]
Muluh Muluh [contributor]
Giulio Benedetti [contributor]
Moritz Emanuel Beber moritz.beber@igdore.org (ORCID) [contributor]
Nitesh Turaga [contributor]
Chouaib Benchraka [contributor]
Akewak Jeba [contributor]
Himmi Lindgren [contributor]
Noah De Gunst [contributor]
Théotime Pralas [contributor]
Shadman Ishraq [contributor]
Eineje Ameh [contributor]
Artur Sannikov [contributor]
Hervé Pagès [contributor]
Rajesh Shigdel [contributor]
Katariina Pärnänen [contributor]
Pande Erawijantari [contributor]
Danielle Callan [contributor]