6 Study material

6.1 Online tutorial

The course will utilize material from the online book (beta version) Orchestrating Microbiome Analysis with R/Bioconductor (OMA).

We encourage to familiarize with the material and test examples already before the course.

6.2 Lecture slides

Slides

6.3 Tasks

Exercises

Example solutions

6.4 Extra material on miaverse and R programming

Resources

In this course, we will analyze HintikkaXOData. In this rat study, it was analyzed whether fats and prebiotics affects the microbiome.

The data consist of 4 groups:

- High-fat diet without prebiotics
- High-fat diet with prebiotics
- Low-fat diet without prebiotics
- Low-fat diet with prebiotics

You can find the data from here.

Tuomas Borman, and Leo Lahti. 2022. Multi-Omic Data Science with r/Bioconductor. microbiome.github.io.