Row tree plot

Source: R/AllClasses.R, R/class-RowTreePlot.R

Hierarchical tree for the rows of a TreeSummarizedExperiment object. The tree can be produced with addTaxonomyTree and gets stored in the rowTree slot of the experiment object. The panel implements plotRowTree to generate the plot.

Value

The RowTreePlot(...) constructor creates an instance of a RowTreePlot class, where any slot and its value can be passed to ... as a named argument.

Slot overview

This class inherits all slots from its parent class TreePlot.

Author

Giulio Benedetti

Examples

# Import TreeSE
library(mia)
data("Tengeler2020", package = "mia")
tse <- Tengeler2020

# Store panel into object
panel <- RowTreePlot()
# View some adjustable parameters
head(slotNames(panel))
#> [1] "layout"         "add.legend"     "edge.colour.by" "tip.colour.by" 
#> [5] "order.tree"     "tip.size.by"   

# Launch iSEE with custom initial panel
if (interactive()) {
  iSEE(tse, initial = c(panel))
}