miaTime
This R package can be used to analyse time series data for microbial communities. The package is part of miaverse, and is based on the TreeSummarizedExperiment data container.
See the package homepage for example workflows.
Installation
The package can be directly installed from R command line.
devtools::install_github("microbiome/miaTime")
library(miaTime)Contributions and acknowledgments
You can find us online from Gitter.
Contributions are very welcome through issues and pull requests at the development site. We follow a git flow kind of approach. Development version should be done against the main branch and then merged to release for release. (https://guides.github.com/introduction/flow/)
Kindly cite this work. For citation details, see R command
citation("miaTime") ## Warning in citation("miaTime"): could not determine year for 'miaTime' from
## package DESCRIPTION file
## To cite package 'miaTime' in publications use:
##
## Lahti L, Borman T, Simsek Y (????). _miaTime: Microbiome Time Series
## Analysis_. R package version 0.99.8,
## <https://github.com/microbiome/miaTime>.
##
## A BibTeX entry for LaTeX users is
##
## @Manual{,
## title = {miaTime: Microbiome Time Series Analysis},
## author = {Leo Lahti and Tuomas Borman and Yagmur Simsek},
## note = {R package version 0.99.8},
## url = {https://github.com/microbiome/miaTime},
## }Code of conduct
The project is released with a Contributor Code of Conduct. By contributing to this project, you agree to abide by its terms.
