This data set contains genus-level microbiota profiling with HITChip for 1006 western adults with no reported health complications, reported in Lahti et al. (2014).
data(hitchip1006)The data set in
TreeSummarizedExperiment
format.
Loads the data set in R.
The data is also available for download from the Data Dryad
http://doi.org/10.5061/dryad.pk75d and was initially released
as a phyloseq object under the name atlas1006 in microbiome R package.
The miaTime package provides this as
TreeSummarizedExperiment
object.
Some of the subjects also have short time series.
Lahti et al. Tipping elements of the human intestinal ecosystem. Nature Communications 5:4344, 2014. https://doi.org/10.1038/ncomms5344.