Package index • miaTime

Divergence
`getBaselineDivergence()` `addBaselineDivergence()`	Beta diversity between the baseline and later time steps
`getStepwiseDivergence()` `addStepwiseDivergence()`	Beta diversity between consecutive time steps
Feature dynamics
`addShortTermChange()` `getShortTermChange()`	Short term changes in abundance
`getStability()` `addStability()`	Estimate stability
`getBimodality()` `addBimodality()`	Calculate coefficient of bimodality.
Sampling
`getSamplingSummary()`	Summarize sampling over time
Survival
`getSurvival()` `addSurvival()`	Survival analysis
Datasets
`crohn_survival`	Survival microbiome data from 150 individuals with longitudinal measurements
`hitchip1006`	HITChip Atlas with 1006 Western Adults
`HMP_2019_ibdmdb`	HMP_2019_ibdmdb
`Kumaraswamy2024`	Kumaraswamy2024
`minimalgut`	Human Gut Minimal Microbiome Profiling Data
`MovingPictures`	Moving Pictures of the Human Microbiome
`SilvermanAGutData`	SilvermanAGutData
`temporalMicrobiome20`	Gut Microbiome Profiling 20 Belgian Women
Package
`miaTime-package` `miaTime`	`miaTime` Package.

Reference