This time-series data set contains absolute temporal variation for most major gut genera, as well as diversity indicators for both relative and quantitative abundance profiles of healthy women living in an industrialized country.
data(temporalMicrobiome20)The data set in
TreeSummarizedExperiment
format.
Loads the data set in R.
The data is available also on
https://www.nature.com/articles/s41467-021-27098-7#Sec43
The data contains 713 fecal samples from 20 Belgian women collected
over six weeks.
The current implementation in miaTime provides this as
TreeSummarizedExperiment
object.
Vandeputte, D., De Commer, L., Tito, R.Y. et al. Temporal variability in quantitative human gut microbiome profiles and implications for clinical research. Nat Commun 12, 6740 (2021). https://doi.org/10.1038/s41467-021-27098-7