Bioconductor

Monday, August 25, 2025

Bioconductor

  • Community-driven open-source project
  1. Training programs & workshops
  2. Conferences & community support
  3. Bioinformatics software
Bioconductor logo.

Software

  • ~2,300 R packages
  • Review, testing, documentation

Microbiome Analysis (mia)

  • Microbiome data science ecosystem
  • “Downstream”, statistical analysis
  • mia package top 8.11% Bioconductor downloads

Bioconductor sticker mia logo

Benefits

  1. Tightly linked with broader Bioconductor ecosystem
  2. Improved scalability
  3. Improved multi-table integration

Community-driven ecosystem of tools

mia logo. MGnifyR logo. HoloFoodR logo. iSEE logo. MAE logo. SE logo. SCE logo. scater logo. benchdamic logo. netcomi logo. radEmu logo. DESeq2 logo. Biobakery logo. anansi logo.

Data containers

References

https://microbiome.github.io/