Bioconductor

Data science workflow

R for Data Science / H. Wickham

Data analysis package ecosystem

Number of open analysis tools has increased exponentially

Package ecosystem: microbiome ecology

Started in 2001 as a platform for microarray data analysis

Now 2200+ packages:

• Sequencing (DNA, RNA, ChIP, SC)

• Proteomics

• Metabolomics

• Microbiomics

• Multi-omics integration

Collaborative development

- 50,000+ papers in PubMed

- software & data repository

- tutorials & documentation

- bioinformatics peer support

Management

- Core team

- SAB & TAB & CAB

- Global contributor base

Collaborative development

Cultures of open collaboration

Open data science ecosystems

R/Bioc community

(Global) Bioconductor conference

Asian Bioconductor conference

European Bioconductor conference