Package index • miaViz

All functions
`plotTaxaPrevalence()` `plotFeaturePrevalence()`	These functions will be deprecated. Please use other functions instead.
`getNeatOrder()`	Sorting by radial theta angle
`col_graph` `row_graph` `row_graph_order`	miaViz example data
`mia-plot-args`	Additional arguments for plotting
`miaViz` `miaViz-package`	miaViz - Microbiome Analysis Plotting and Visualization
`plotAbundance()`	Plotting abundance data
`plotAbundanceDensity()`	Plot abundance density
`plotCCA()` `plotRDA()`	Plot RDA or CCA object
`plotColTile()` `plotRowTile()`	Plot factor data as tiles
`plotDMNFit()`	Plotting Dirichlet-Multinomial Mixture Model data
`plotColGraph()` `plotRowGraph()`	Plotting igraph objects with information from a `SummarizedExperiment`
`plotHistogram()` `plotBarplot()`	Create histogram or barplot of `assay`, `rowData` or `colData`
`plotLoadings()`	Plot feature loadings for TreeSummarizedExperiment objects or feature loadings numeric matrix.
`plotMediation()`	Visualize mediation
`plotNMDS()`	Wrapper for scater::plotReducedDim()
`plotRowPrevalence()` `plotPrevalentAbundance()` `plotPrevalence()`	Plot prevalence information
`plotScree()`	Create a scree plot
`plotSeries()`	Plot Series
`plotRowTree()` `plotColTree()`	Plotting tree information enriched with information
`rowTreeData()` `colTreeData()` `rowTreeData<-`() `colTreeData<-`() `combineTreeData()`	Adding information to tree data in `TreeSummarizedExperiment`

Reference