All functions

col_graph row_graph row_graph_order

miaViz example data

mia-plot-args

Additional arguments for plotting

miaViz miaViz-package

miaViz - Microbiome Analysis Plotting and Visualization

plotAbundance()

Plotting abundance data

plotAbundanceDensity()

Plot abundance density

plotCCA() plotRDA()

Plot RDA or CCA object

plotColTile() plotRowTile()

Plot factor data as tiles

plotDMNFit()

Plotting Dirichlet-Multinomial Mixture Model data

plotColGraph() plotRowGraph()

Plotting igraph objects with information from a SummarizedExperiment

plotPrevalence() plotPrevalentAbundance() plotFeaturePrevalence() plotTaxaPrevalence()

Plot prevalence information

plotSeries()

Plot Series

plotRowTree() plotColTree()

Plotting tree information enriched with information

rowTreeData() colTreeData() `rowTreeData<-`() `colTreeData<-`() combineTreeData()

Adding information to tree data in TreeSummarizedExperiment