bash
docker run -it ghcr.io/microbiome/oma:devel RAppendix F — Technical info
F.1 Docker image
A Docker image built from this repository is available here:
TipGet started now 🎉
You can get access to all the packages used in this book in < 1 minute, using this command in a terminal:
RStudio Server
An RStudio Server instance can be initiated from the Docker image as follows:
bash
docker run \
--volume <local_folder>:<destination_folder> \
-e PASSWORD=OMA \
-p 8787:8787 \
ghcr.io/microbiome/oma:develThe initiated RStudio Server instance will be available at https://localhost:8787.
F.2 Session info
NoteClick to expand 👇
sessioninfo::session_info(
installed.packages()[, "Package"],
include_base = TRUE
)
## ─ Session info ────────────────────────────────────────────────────────────
## setting value
## version R Under development (unstable) (2026-01-25 r89330)
## os Ubuntu 24.04.3 LTS
## system x86_64, linux-gnu
## ui X11
## language (EN)
## collate C
## ctype en_US.UTF-8
## tz Etc/UTC
## date 2026-01-29
## pandoc 3.8.3 @ /usr/bin/ (via rmarkdown)
## quarto 1.8.25 @ /usr/local/bin/quarto
##
## ─ Packages ────────────────────────────────────────────────────────────────
## package * version date (UTC) lib source
## abind 1.4-8 2024-09-12 [2] CRAN (R 4.6.0)
## additivityTests 1.1-4.2 2024-05-14 [2] CRAN (R 4.6.0)
## ade4 1.7-23 2025-02-14 [2] CRAN (R 4.6.0)
## ALDEx2 1.43.0 2025-10-31 [2] Bioconductor 3.23 (R 4.6.0)
## ANCOMBC 2.13.0 2025-10-30 [2] Bioconductor 3.23 (R 4.6.0)
## AnnotationDbi 1.73.0 2025-10-31 [2] Bioconductor 3.23 (R 4.6.0)
## AnnotationHub 4.1.0 2025-10-31 [2] Bioconductor 3.23 (R 4.6.0)
## ape 5.8-1 2024-12-16 [2] CRAN (R 4.6.0)
## aplot 0.2.9 2025-09-12 [2] CRAN (R 4.6.0)
## arrayhelpers 1.1-0 2020-02-04 [2] CRAN (R 4.6.0)
## askpass 1.2.1 2024-10-04 [2] CRAN (R 4.6.0)
## assertthat 0.2.1 2019-03-21 [2] CRAN (R 4.6.0)
## assorthead 1.5.8 2026-01-23 [2] Bioconductor 3.23 (R 4.6.0)
## backports 1.5.0 2024-05-23 [2] CRAN (R 4.6.0)
## bartMachine 1.4.1.1 2026-01-20 [2] CRAN (R 4.6.0)
## bartMachineJARs 1.2.2 2026-01-13 [2] CRAN (R 4.6.0)
## base * 4.6.0 2026-01-26 [3] local
## base64enc 0.1-3 2015-07-28 [2] CRAN (R 4.6.0)
## basilisk 1.23.0 2025-10-30 [2] Bioconductor 3.23 (R 4.6.0)
## bayesm 3.1-7 2025-11-11 [2] CRAN (R 4.6.0)
## bayesreg 1.3 2024-09-30 [2] CRAN (R 4.6.0)
## bayestestR 0.17.0 2025-08-29 [2] CRAN (R 4.6.0)
## BBmisc 1.13.1 2026-01-21 [2] CRAN (R 4.6.0)
## beachmat 2.27.2 2026-01-13 [2] Bioconductor 3.23 (R 4.6.0)
## beeswarm 0.4.0 2021-06-01 [2] CRAN (R 4.6.0)
## BH 1.90.0-1 2025-12-14 [2] CRAN (R 4.6.0)
## biclust 2.0.3.1 2023-05-19 [2] CRAN (R 4.6.0)
## bigD 0.3.1 2025-04-03 [2] CRAN (R 4.6.0)
## Biobase 2.71.0 2025-10-30 [2] Bioconductor 3.23 (R 4.6.0)
## BiocBaseUtils 1.13.0 2025-10-30 [2] Bioconductor 3.23 (R 4.6.0)
## BiocBook 1.9.0 2025-10-31 [2] Bioconductor 3.23 (R 4.6.0)
## BiocFileCache 3.1.0 2025-10-30 [2] Bioconductor 3.23 (R 4.6.0)
## BiocGenerics 0.57.0 2025-10-30 [2] Bioconductor 3.23 (R 4.6.0)
## BiocManager 1.30.27 2025-11-14 [2] CRAN (R 4.6.0)
## BiocNeighbors 2.5.2 2026-01-21 [2] Bioconductor 3.23 (R 4.6.0)
## BiocParallel 1.45.0 2025-10-30 [2] Bioconductor 3.23 (R 4.6.0)
## BiocSingular 1.27.1 2025-11-17 [2] Bioconductor 3.23 (R 4.6.0)
## BiocStyle 2.39.0 2025-10-30 [2] Bioconductor 3.23 (R 4.6.0)
## BiocVersion 3.23.1 2025-10-30 [2] Bioconductor 3.23 (R 4.6.0)
## biomformat 1.39.0 2025-10-30 [2] Bioconductor 3.23 (R 4.6.0)
## Biostrings 2.79.4 2026-01-07 [2] Bioconductor 3.23 (R 4.6.0)
## bit 4.6.0 2025-03-06 [2] CRAN (R 4.6.0)
## bit64 4.6.0-1 2025-01-16 [2] CRAN (R 4.6.0)
## bitops 1.0-9 2024-10-03 [2] CRAN (R 4.6.0)
## blob 1.3.0 2026-01-14 [2] CRAN (R 4.6.0)
## bluster 1.21.0 2025-10-30 [2] Bioconductor 3.23 (R 4.6.0)
## bookdown 0.46 2025-12-05 [2] CRAN (R 4.6.0)
## boot 1.3-32 2025-08-29 [3] CRAN (R 4.6.0)
## brew 1.0-10 2023-12-16 [2] CRAN (R 4.6.0)
## brio 1.1.5 2024-04-24 [2] CRAN (R 4.6.0)
## broom 1.0.12 2026-01-27 [2] CRAN (R 4.6.0)
## bslib 0.10.0 2026-01-26 [2] CRAN (R 4.6.0)
## ca 0.71.1 2020-01-24 [2] CRAN (R 4.6.0)
## cachem 1.1.0 2024-05-16 [2] CRAN (R 4.6.0)
## Cairo 1.7-0 2025-10-29 [2] CRAN (R 4.6.0)
## callr 3.7.6 2024-03-25 [2] CRAN (R 4.6.0)
## car 3.1-3 2024-09-27 [2] CRAN (R 4.6.0)
## carData 3.0-5 2022-01-06 [2] CRAN (R 4.6.0)
## caret 7.0-1 2024-12-10 [2] CRAN (R 4.6.0)
## caTools 1.18.3 2024-09-04 [2] CRAN (R 4.6.0)
## cellranger 1.1.0 2016-07-27 [2] CRAN (R 4.6.0)
## checkmate 2.3.3 2025-08-18 [2] CRAN (R 4.6.0)
## cigarillo 1.1.0 2025-10-31 [2] Bioconductor 3.23 (R 4.6.0)
## circlize 0.4.17 2025-12-08 [2] CRAN (R 4.6.0)
## class 7.3-23 2025-01-01 [3] CRAN (R 4.6.0)
## cli 3.6.5 2025-04-23 [2] CRAN (R 4.6.0)
## clipr 0.8.0 2022-02-22 [2] CRAN (R 4.6.0)
## clock 0.7.4 2026-01-13 [2] CRAN (R 4.6.0)
## clue 0.3-66 2024-11-13 [2] CRAN (R 4.6.0)
## cluster 2.1.8.1 2025-03-12 [3] CRAN (R 4.6.0)
## cobiclust 0.1.2 2024-02-16 [2] CRAN (R 4.6.0)
## coda 0.19-4.1 2024-01-31 [2] CRAN (R 4.6.0)
## CodeDepends 0.6.6 2024-04-07 [2] CRAN (R 4.6.0)
## codetools 0.2-20 2024-03-31 [3] CRAN (R 4.6.0)
## colorspace 2.1-2 2025-09-22 [2] CRAN (R 4.6.0)
## colourpicker 1.3.0 2023-08-21 [2] CRAN (R 4.6.0)
## commonmark 2.0.0 2025-07-07 [2] CRAN (R 4.6.0)
## compiler 4.6.0 2026-01-26 [3] local
## ComplexHeatmap 2.27.0 2025-10-31 [2] Bioconductor 3.23 (R 4.6.0)
## compositions 2.0-9 2025-08-21 [2] CRAN (R 4.6.0)
## conflicted 1.2.0 2023-02-01 [2] CRAN (R 4.6.0)
## corpcor 1.6.10 2021-09-16 [2] CRAN (R 4.6.0)
## corrplot 0.95 2024-10-14 [2] CRAN (R 4.6.0)
## cowplot 1.2.0 2025-07-07 [2] CRAN (R 4.6.0)
## cpp11 0.5.3 2026-01-20 [2] CRAN (R 4.6.0)
## crayon 1.5.3 2024-06-20 [2] CRAN (R 4.6.0)
## credentials 2.0.3 2025-09-12 [2] CRAN (R 4.6.0)
## crosstalk 1.2.2 2025-08-26 [2] CRAN (R 4.6.0)
## cubature 2.1.4-1 2025-11-22 [2] CRAN (R 4.6.0)
## curatedMetagenomicData 3.19.0 2025-11-04 [2] Bioconductor 3.23 (R 4.6.0)
## curl 7.0.0 2025-08-19 [2] CRAN (R 4.6.0)
## cvAUC 1.1.4 2022-01-17 [2] CRAN (R 4.6.0)
## CVXR 1.0-15 2024-11-07 [2] CRAN (R 4.6.0)
## dada2 1.39.0 2025-10-31 [2] Bioconductor 3.23 (R 4.6.0)
## dagitty 0.3-4 2023-12-07 [2] CRAN (R 4.6.0)
## data.table 1.18.2.1 2026-01-27 [2] CRAN (R 4.6.0)
## datasets * 4.6.0 2026-01-26 [3] local
## datawizard 1.3.0 2025-10-11 [2] CRAN (R 4.6.0)
## DBI 1.2.3 2024-06-02 [2] CRAN (R 4.6.0)
## dbplyr 2.5.1 2025-09-10 [2] CRAN (R 4.6.0)
## DECIPHER 3.7.0 2025-10-31 [2] Bioconductor 3.23 (R 4.6.0)
## decontam 1.31.0 2025-10-30 [2] Bioconductor 3.23 (R 4.6.0)
## DelayedArray 0.37.0 2025-10-31 [2] Bioconductor 3.23 (R 4.6.0)
## DelayedMatrixStats 1.33.0 2025-10-31 [2] Bioconductor 3.23 (R 4.6.0)
## deldir 2.0-4 2024-02-28 [2] CRAN (R 4.6.0)
## dendextend 1.19.1 2025-07-15 [2] CRAN (R 4.6.0)
## DEoptimR 1.1-4 2025-07-27 [2] CRAN (R 4.6.0)
## Deriv 4.2.0 2025-06-20 [2] CRAN (R 4.6.0)
## desc 1.4.3 2023-12-10 [2] CRAN (R 4.6.0)
## DescTools 0.99.60 2025-03-28 [2] CRAN (R 4.6.0)
## devtools 2.4.6 2025-10-03 [2] CRAN (R 4.6.0)
## diagram 1.6.5 2020-09-30 [2] CRAN (R 4.6.0)
## diffobj 0.3.6 2025-04-21 [2] CRAN (R 4.6.0)
## digest 0.6.39 2025-11-19 [2] CRAN (R 4.6.0)
## dir.expiry 1.19.0 2025-10-30 [2] Bioconductor 3.23 (R 4.6.0)
## directlabels 2025.6.24 2025-06-24 [2] CRAN (R 4.6.0)
## DirichletMultinomial 1.53.0 2025-10-31 [2] Bioconductor 3.23 (R 4.6.0)
## distributional 0.6.0 2026-01-14 [2] CRAN (R 4.6.0)
## doBy 4.7.1 2025-12-02 [2] CRAN (R 4.6.0)
## docopt 0.7.2 2025-03-25 [2] CRAN (R 4.6.0)
## doFuture 1.2.0 2026-01-15 [2] CRAN (R 4.6.0)
## doParallel 1.0.17 2022-02-07 [2] CRAN (R 4.6.0)
## doRNG 1.8.6.2 2025-04-02 [2] CRAN (R 4.6.0)
## doSNOW 1.0.20 2022-02-04 [2] CRAN (R 4.6.0)
## downlit 0.4.5 2025-11-14 [2] CRAN (R 4.6.0)
## dplyr 1.1.4 2023-11-17 [2] CRAN (R 4.6.0)
## dqrng 0.4.1 2024-05-28 [2] CRAN (R 4.6.0)
## DT 0.34.0 2025-09-02 [2] CRAN (R 4.6.0)
## dtplyr 1.3.2 2025-09-10 [2] CRAN (R 4.6.0)
## dynamicTreeCut 1.63-1 2016-03-11 [2] CRAN (R 4.6.0)
## e1071 1.7-17 2025-12-18 [2] CRAN (R 4.6.0)
## ecodive 2.2.2 2026-01-16 [2] CRAN (R 4.6.0)
## ECOSolveR 0.5.5 2023-05-15 [2] CRAN (R 4.6.0)
## egg 0.4.5 2019-07-13 [2] CRAN (R 4.6.0)
## ellipse 0.5.0 2023-07-20 [2] CRAN (R 4.6.0)
## ellipsis 0.3.2 2021-04-29 [2] CRAN (R 4.6.0)
## emmeans 2.0.1 2025-12-16 [2] CRAN (R 4.6.0)
## energy 1.7-12 2024-08-24 [2] CRAN (R 4.6.0)
## estimability 1.5.1 2024-05-12 [2] CRAN (R 4.6.0)
## evaluate 1.0.5 2025-08-27 [2] CRAN (R 4.6.0)
## Exact 3.3 2024-07-21 [2] CRAN (R 4.6.0)
## ExperimentHub 3.1.0 2025-10-31 [2] Bioconductor 3.23 (R 4.6.0)
## expm 1.0-0 2024-08-19 [2] CRAN (R 4.6.0)
## factoextra 1.0.7 2020-04-01 [2] CRAN (R 4.6.0)
## FactoMineR 2.13 2026-01-12 [2] CRAN (R 4.6.0)
## fansi 1.0.7 2025-11-19 [2] CRAN (R 4.6.0)
## farver 2.1.2 2024-05-13 [2] CRAN (R 4.6.0)
## fastcluster 1.3.0 2025-05-07 [2] CRAN (R 4.6.0)
## fastmap 1.2.0 2024-05-15 [2] CRAN (R 4.6.0)
## fastmatch 1.1-8 2026-01-17 [2] CRAN (R 4.6.0)
## fBasics 4052.98 2025-12-07 [2] CRAN (R 4.6.0)
## fdrtool 1.2.18 2024-08-20 [2] CRAN (R 4.6.0)
## fido 1.1.2 2025-02-27 [2] CRAN (R 4.6.0)
## filelock 1.0.3 2023-12-11 [2] CRAN (R 4.6.0)
## filematrix 1.3 2018-02-27 [2] CRAN (R 4.6.0)
## flashClust 1.01-2 2012-08-21 [2] CRAN (R 4.6.0)
## flexclust 1.5.0 2025-02-28 [2] CRAN (R 4.6.0)
## fMultivar 4031.84 2023-07-11 [2] CRAN (R 4.6.0)
## FNN 1.1.4.1 2024-09-22 [2] CRAN (R 4.6.0)
## fontawesome 0.5.3 2024-11-16 [2] CRAN (R 4.6.0)
## fontBitstreamVera 0.1.1 2017-02-01 [2] CRAN (R 4.6.0)
## fontLiberation 0.1.0 2016-10-15 [2] CRAN (R 4.6.0)
## fontquiver 0.2.1 2017-02-01 [2] CRAN (R 4.6.0)
## forcats 1.0.1 2025-09-25 [2] CRAN (R 4.6.0)
## foreach 1.5.2 2022-02-02 [2] CRAN (R 4.6.0)
## forecast 9.0.0 2026-01-11 [2] CRAN (R 4.6.0)
## foreign 0.8-90 2025-03-31 [3] CRAN (R 4.6.0)
## formatR 1.14 2023-01-17 [2] CRAN (R 4.6.0)
## Formula 1.2-5 2023-02-24 [2] CRAN (R 4.6.0)
## formula.tools 1.7.1 2018-03-01 [2] CRAN (R 4.6.0)
## fracdiff 1.5-3 2024-02-01 [2] CRAN (R 4.6.0)
## fs 1.6.6 2025-04-12 [2] CRAN (R 4.6.0)
## futile.logger 1.4.9 2025-12-29 [2] CRAN (R 4.6.0)
## futile.options 1.0.1 2018-04-20 [2] CRAN (R 4.6.0)
## future 1.69.0 2026-01-16 [2] CRAN (R 4.6.0)
## future.apply 1.20.1 2025-12-09 [2] CRAN (R 4.6.0)
## gam 1.22-7 2025-12-10 [2] CRAN (R 4.6.0)
## gargle 1.6.1 2026-01-29 [2] CRAN (R 4.6.0)
## gclus 1.3.3 2025-03-28 [2] CRAN (R 4.6.0)
## gdtools 0.4.4 2025-10-06 [2] CRAN (R 4.6.0)
## generics 0.1.4 2025-05-09 [2] CRAN (R 4.6.0)
## GenomicAlignments 1.47.0 2025-10-31 [2] Bioconductor 3.23 (R 4.6.0)
## GenomicRanges 1.63.1 2025-12-08 [2] Bioconductor 3.23 (R 4.6.0)
## geometry 0.5.2 2025-02-08 [2] CRAN (R 4.6.0)
## gert 2.3.1 2026-01-11 [2] CRAN (R 4.6.0)
## getopt 1.20.4 2023-10-01 [2] CRAN (R 4.6.0)
## GetoptLong 1.1.0 2025-11-28 [2] CRAN (R 4.6.0)
## ggbeeswarm 0.7.3 2025-11-29 [2] CRAN (R 4.6.0)
## ggdag 0.2.13 2024-07-22 [2] CRAN (R 4.6.0)
## ggdist 3.3.3 2025-04-23 [2] CRAN (R 4.6.0)
## ggExtra 0.11.0 2025-09-01 [2] CRAN (R 4.6.0)
## ggforce 0.5.0 2025-06-18 [2] CRAN (R 4.6.0)
## ggfun 0.2.0 2025-07-15 [2] CRAN (R 4.6.0)
## ggiraph 0.9.3 2026-01-19 [2] CRAN (R 4.6.0)
## ggnewscale 0.5.2 2025-06-20 [2] CRAN (R 4.6.0)
## ggplot2 4.0.1 2025-11-14 [2] CRAN (R 4.6.0)
## ggplotify 0.1.3 2025-09-20 [2] CRAN (R 4.6.0)
## ggpubr 0.6.2 2025-10-17 [2] CRAN (R 4.6.0)
## ggraph 2.2.2 2025-08-24 [2] CRAN (R 4.6.0)
## ggrastr 1.0.2 2023-06-01 [2] CRAN (R 4.6.0)
## ggrepel 0.9.6 2024-09-07 [2] CRAN (R 4.6.0)
## ggsci 4.2.0 2025-12-17 [2] CRAN (R 4.6.0)
## ggsignif 0.6.4 2022-10-13 [2] CRAN (R 4.6.0)
## ggtree 4.1.1 2025-10-30 [2] Bioconductor 3.23 (R 4.6.0)
## gh 1.5.0 2025-05-26 [2] CRAN (R 4.6.0)
## gitcreds 0.1.2 2022-09-08 [2] CRAN (R 4.6.0)
## glasso 1.11 2019-10-01 [2] CRAN (R 4.6.0)
## gld 2.6.8 2025-09-14 [2] CRAN (R 4.6.0)
## glmnet 4.1-10 2025-07-17 [2] CRAN (R 4.6.0)
## GlobalOptions 0.1.3 2025-11-28 [2] CRAN (R 4.6.0)
## globals 0.18.0 2025-05-08 [2] CRAN (R 4.6.0)
## glue 1.8.0 2024-09-30 [2] CRAN (R 4.6.0)
## gmp 0.7-5 2024-08-23 [2] CRAN (R 4.6.0)
## GO.db 3.22.0 2025-12-12 [2] Bioconductor
## googledrive 2.1.2 2025-09-10 [2] CRAN (R 4.6.0)
## googlesheets4 1.1.2 2025-09-03 [2] CRAN (R 4.6.0)
## gower 1.0.2 2024-12-17 [2] CRAN (R 4.6.0)
## GPArotation 2025.3-1 2025-04-12 [2] CRAN (R 4.6.0)
## gplots 3.3.0 2025-11-30 [2] CRAN (R 4.6.0)
## graph 1.89.1 2025-12-02 [2] Bioconductor 3.23 (R 4.6.0)
## graphics * 4.6.0 2026-01-26 [3] local
## graphlayouts 1.2.2 2025-01-23 [2] CRAN (R 4.6.0)
## grDevices * 4.6.0 2026-01-26 [3] local
## grid 4.6.0 2026-01-26 [3] local
## gridBase 0.4-7 2014-02-24 [2] CRAN (R 4.6.0)
## gridExtra 2.3 2017-09-09 [2] CRAN (R 4.6.0)
## gridGraphics 0.5-1 2020-12-13 [2] CRAN (R 4.6.0)
## gsEasy 1.5 2024-02-20 [2] CRAN (R 4.6.0)
## gsl 2.1-9 2025-11-10 [2] CRAN (R 4.6.0)
## gss 2.2-10 2025-11-19 [2] CRAN (R 4.6.0)
## gt 1.3.0 2026-01-22 [2] CRAN (R 4.6.0)
## gtable 0.3.6 2024-10-25 [2] CRAN (R 4.6.0)
## gtools 3.9.5 2023-11-20 [2] CRAN (R 4.6.0)
## h5mread 1.3.1 2025-11-21 [2] Bioconductor 3.23 (R 4.6.0)
## hardhat 1.4.2 2025-08-20 [2] CRAN (R 4.6.0)
## haven 2.5.5 2025-05-30 [2] CRAN (R 4.6.0)
## HDF5Array 1.39.0 2025-10-31 [2] Bioconductor 3.23 (R 4.6.0)
## heatmaply 1.6.0 2025-07-12 [2] CRAN (R 4.6.0)
## here 1.0.2 2025-09-15 [2] CRAN (R 4.6.0)
## highr 0.11 2024-05-26 [2] CRAN (R 4.6.0)
## Hmisc 5.2-5 2026-01-09 [2] CRAN (R 4.6.0)
## hms 1.1.4 2025-10-17 [2] CRAN (R 4.6.0)
## htmlTable 2.4.3 2024-07-21 [2] CRAN (R 4.6.0)
## htmltools 0.5.9 2025-12-04 [2] CRAN (R 4.6.0)
## htmlwidgets 1.6.4 2023-12-06 [2] CRAN (R 4.6.0)
## httpuv 1.6.16 2025-04-16 [2] CRAN (R 4.6.0)
## httr 1.4.7 2023-08-15 [2] CRAN (R 4.6.0)
## httr2 1.2.2 2025-12-08 [2] CRAN (R 4.6.0)
## huge 1.3.5 2021-06-30 [2] CRAN (R 4.6.0)
## hwriter 1.3.2.1 2022-04-08 [2] CRAN (R 4.6.0)
## ids 1.0.1 2017-05-31 [2] CRAN (R 4.6.0)
## igraph 2.2.1 2025-10-27 [2] CRAN (R 4.6.0)
## impute 1.85.0 2025-10-30 [2] Bioconductor 3.23 (R 4.6.0)
## ini 0.3.1 2018-05-20 [2] CRAN (R 4.6.0)
## insight 1.4.5 2026-01-26 [2] CRAN (R 4.6.0)
## interp 1.1-6 2024-01-26 [2] CRAN (R 4.6.0)
## ipred 0.9-15 2024-07-18 [2] CRAN (R 4.6.0)
## IRanges 2.45.0 2025-10-31 [2] Bioconductor 3.23 (R 4.6.0)
## irlba 2.3.5.1 2022-10-03 [2] CRAN (R 4.6.0)
## isoband 0.3.0 2025-12-07 [2] CRAN (R 4.6.0)
## iterators 1.0.14 2022-02-05 [2] CRAN (R 4.6.0)
## itertools 0.1-3 2014-03-12 [2] CRAN (R 4.6.0)
## janeaustenr 1.0.0 2022-08-26 [2] CRAN (R 4.6.0)
## jomo 2.7-6 2023-04-15 [2] CRAN (R 4.6.0)
## jpeg 0.1-11 2025-03-21 [2] CRAN (R 4.6.0)
## jquerylib 0.1.4 2021-04-26 [2] CRAN (R 4.6.0)
## jsonlite 2.0.0 2025-03-27 [2] CRAN (R 4.6.0)
## juicyjuice 0.1.0 2022-11-10 [2] CRAN (R 4.6.0)
## KEGGREST 1.51.1 2025-11-17 [2] Bioconductor 3.23 (R 4.6.0)
## kernlab 0.9-33 2024-08-13 [2] CRAN (R 4.6.0)
## KernSmooth 2.23-26 2025-01-01 [3] CRAN (R 4.6.0)
## knitr 1.51 2025-12-20 [2] CRAN (R 4.6.0)
## labeling 0.4.3 2023-08-29 [2] CRAN (R 4.6.0)
## lambda.r 1.2.4 2019-09-18 [2] CRAN (R 4.6.0)
## latentcor 2.0.2 2025-11-26 [2] CRAN (R 4.6.0)
## later 1.4.5 2026-01-08 [2] CRAN (R 4.6.0)
## lattice 0.22-7 2025-04-02 [3] CRAN (R 4.6.0)
## latticeExtra 0.6-31 2025-09-10 [2] CRAN (R 4.6.0)
## lava 1.8.2 2025-10-30 [2] CRAN (R 4.6.0)
## lavaan 0.6-21 2025-12-21 [2] CRAN (R 4.6.0)
## lazyeval 0.2.2 2019-03-15 [2] CRAN (R 4.6.0)
## leaps 3.2 2024-06-10 [2] CRAN (R 4.6.0)
## lhs 1.2.0 2024-06-30 [2] CRAN (R 4.6.0)
## lifecycle 1.0.5 2026-01-08 [2] CRAN (R 4.6.0)
## limma 3.67.0 2025-10-30 [2] Bioconductor 3.23 (R 4.6.0)
## linprog 0.9-6 2026-01-19 [2] CRAN (R 4.6.0)
## listenv 0.10.0 2025-11-02 [2] CRAN (R 4.6.0)
## litedown 0.9 2025-12-18 [2] CRAN (R 4.6.0)
## littler 0.3.21 2025-03-25 [2] CRAN (R 4.6.0)
## lme4 1.1-38 2025-12-02 [2] CRAN (R 4.6.0)
## lmerTest 3.2-0 2026-01-13 [2] CRAN (R 4.6.0)
## lmom 3.2 2024-09-30 [2] CRAN (R 4.6.0)
## lmtest 0.9-40 2022-03-21 [2] CRAN (R 4.6.0)
## logging 0.10-108 2019-07-14 [2] CRAN (R 4.6.0)
## logistf 1.26.1 2025-04-16 [2] CRAN (R 4.6.0)
## lpSolve 5.6.23 2024-12-14 [2] CRAN (R 4.6.0)
## lubridate 1.9.4 2024-12-08 [2] CRAN (R 4.6.0)
## maaslin3 1.3.0 2025-11-03 [2] Bioconductor 3.23 (R 4.6.0)
## magic 1.6-1 2022-11-16 [2] CRAN (R 4.6.0)
## magrittr 2.0.4 2025-09-12 [2] CRAN (R 4.6.0)
## markdown 2.0 2025-03-23 [2] CRAN (R 4.6.0)
## MASS 7.3-65 2025-02-28 [3] CRAN (R 4.6.0)
## Matrix 1.7-4 2025-08-28 [3] CRAN (R 4.6.0)
## MatrixGenerics 1.23.0 2025-10-30 [2] Bioconductor 3.23 (R 4.6.0)
## MatrixModels 0.5-4 2025-03-26 [2] CRAN (R 4.6.0)
## matrixStats 1.5.0 2025-01-07 [2] CRAN (R 4.6.0)
## mediation 4.5.1 2025-06-07 [2] CRAN (R 4.6.0)
## memoise 2.0.1 2021-11-26 [2] CRAN (R 4.6.0)
## methods * 4.6.0 2026-01-26 [3] local
## mgcv 1.9-4 2025-11-07 [3] CRAN (R 4.6.0)
## mia 1.19.2 2025-12-09 [2] Bioconductor 3.23 (R 4.6.0)
## miaTime 1.1.0 2025-11-03 [2] Bioconductor 3.23 (R 4.6.0)
## miaViz 1.19.1 2025-11-09 [2] Bioconductor 3.23 (R 4.6.0)
## mice 3.19.0 2025-12-10 [2] CRAN (R 4.6.0)
## microbenchmark 1.5.0 2024-09-04 [2] CRAN (R 4.6.0)
## microbiome 1.33.0 2025-10-31 [2] Bioconductor 3.23 (R 4.6.0)
## microbiomeDataSets 1.19.0 2025-11-04 [2] Bioconductor 3.23 (R 4.6.0)
## MicrobiomeStat 1.3 2026-01-09 [2] CRAN (R 4.6.0)
## mikropml 1.7.0 2025-10-29 [2] CRAN (R 4.6.0)
## mime 0.13 2025-03-17 [2] CRAN (R 4.6.0)
## miniUI 0.1.2 2025-04-17 [2] CRAN (R 4.6.0)
## minqa 1.2.8 2024-08-17 [2] CRAN (R 4.6.0)
## missForest 1.6.1 2025-10-26 [2] CRAN (R 4.6.0)
## mitml 0.4-5 2023-03-08 [2] CRAN (R 4.6.0)
## mixedCCA 1.6.3 2025-11-18 [2] CRAN (R 4.6.0)
## MLmetrics 1.1.3 2024-04-13 [2] CRAN (R 4.6.0)
## mlr 2.19.3 2025-08-22 [2] CRAN (R 4.6.0)
## mlrMBO 1.1.5.1 2022-07-04 [2] CRAN (R 4.6.0)
## mnormt 2.1.2 2026-01-27 [2] CRAN (R 4.6.0)
## modeest 2.4.0 2019-11-18 [2] CRAN (R 4.6.0)
## ModelMetrics 1.2.2.2 2020-03-17 [2] CRAN (R 4.6.0)
## modelr 0.1.11 2023-03-22 [2] CRAN (R 4.6.0)
## modeltools 0.2-24 2025-05-02 [2] CRAN (R 4.6.0)
## MOFA2 1.21.3 2026-01-21 [2] Bioconductor 3.23 (R 4.6.0)
## multcomp 1.4-29 2025-10-20 [2] CRAN (R 4.6.0)
## multcompView 0.1-10 2024-03-08 [2] CRAN (R 4.6.0)
## MultiAssayExperiment 1.37.2 2025-11-16 [2] Bioconductor 3.23 (R 4.6.0)
## multiview 0.8 2023-03-31 [2] CRAN (R 4.6.0)
## multtest 2.67.0 2025-10-30 [2] Bioconductor 3.23 (R 4.6.0)
## mvtnorm 1.3-3 2025-01-10 [2] CRAN (R 4.6.0)
## NbClust 3.0.1 2022-05-02 [2] CRAN (R 4.6.0)
## NetCoMi 1.2.0 2026-01-29 [2] Github (stefpeschel/NetCoMi@3b8de20)
## nlme 3.1-168 2025-03-31 [3] CRAN (R 4.6.0)
## nloptr 2.2.1 2025-03-17 [2] CRAN (R 4.6.0)
## NMF 0.28 2024-08-22 [2] CRAN (R 4.6.0)
## nnet 7.3-20 2025-01-01 [3] CRAN (R 4.6.0)
## nnls 1.6 2024-10-23 [2] CRAN (R 4.6.0)
## numDeriv 2016.8-1.1 2019-06-06 [2] CRAN (R 4.6.0)
## OMA 0.98.54 2026-01-29 [1] Bioconductor
## ontologyIndex 2.12 2024-02-27 [2] CRAN (R 4.6.0)
## openssl 2.3.4 2025-09-30 [2] CRAN (R 4.6.0)
## operator.tools 1.6.3.1 2026-01-29 [2] CRAN (R 4.6.0)
## optparse 1.7.5 2024-04-16 [2] CRAN (R 4.6.0)
## orca 1.1-3 2024-09-20 [2] CRAN (R 4.6.0)
## ordinal 2025.12-29 2026-01-10 [2] CRAN (R 4.6.0)
## osqp 0.6.3.3 2024-06-08 [2] CRAN (R 4.6.0)
## otel 0.2.0 2025-08-29 [2] CRAN (R 4.6.0)
## pak 0.9.2 2025-12-22 [2] CRAN (R 4.6.0)
## pan 1.9 2023-12-07 [2] CRAN (R 4.6.0)
## parallel 4.6.0 2026-01-26 [3] local
## parallelly 1.46.1 2026-01-08 [2] CRAN (R 4.6.0)
## parallelMap 1.5.1 2021-06-28 [2] CRAN (R 4.6.0)
## ParamHelpers 1.14.2 2025-01-09 [2] CRAN (R 4.6.0)
## patchwork 1.3.2 2025-08-25 [2] CRAN (R 4.6.0)
## pbapply 1.7-4 2025-07-20 [2] CRAN (R 4.6.0)
## pbivnorm 0.6.0 2015-01-23 [2] CRAN (R 4.6.0)
## pbkrtest 0.5.5 2025-07-18 [2] CRAN (R 4.6.0)
## pcaPP 2.0-5 2024-08-19 [2] CRAN (R 4.6.0)
## performance 0.15.3 2025-12-01 [2] CRAN (R 4.6.0)
## permute 0.9-8 2025-06-25 [2] CRAN (R 4.6.0)
## pgdraw 1.1 2019-02-19 [2] CRAN (R 4.6.0)
## phangorn 2.12.1 2024-09-17 [2] CRAN (R 4.6.0)
## pheatmap 1.0.13 2025-06-05 [2] CRAN (R 4.6.0)
## philr 1.37.0 2025-10-30 [2] Bioconductor 3.23 (R 4.6.0)
## phyloseq 1.55.0 2025-10-31 [2] Bioconductor 3.23 (R 4.6.0)
## pillar 1.11.1 2025-09-17 [2] CRAN (R 4.6.0)
## pixmap 0.4-14 2025-07-26 [2] CRAN (R 4.6.0)
## pkgbuild 1.4.8 2025-05-26 [2] CRAN (R 4.6.0)
## pkgconfig 2.0.3 2019-09-22 [2] CRAN (R 4.6.0)
## pkgdown 2.2.0 2025-11-06 [2] CRAN (R 4.6.0)
## pkgload 1.4.1 2025-09-23 [2] CRAN (R 4.6.0)
## plogr 0.2.0 2018-03-25 [2] CRAN (R 4.6.0)
## plotly 4.12.0 2026-01-24 [2] CRAN (R 4.6.0)
## plyr 1.8.9 2023-10-02 [2] CRAN (R 4.6.0)
## png 0.1-8 2022-11-29 [2] CRAN (R 4.6.0)
## polspline 1.1.25 2024-05-10 [2] CRAN (R 4.6.0)
## polyclip 1.10-7 2024-07-23 [2] CRAN (R 4.6.0)
## polynom 1.4-1 2022-04-11 [2] CRAN (R 4.6.0)
## posterior 1.6.1 2025-02-27 [2] CRAN (R 4.6.0)
## praise 1.0.0 2015-08-11 [2] CRAN (R 4.6.0)
## prediction 0.3.18 2024-06-11 [2] CRAN (R 4.6.0)
## preprocessCore 1.73.0 2025-10-30 [2] Bioconductor 3.23 (R 4.6.0)
## prettyunits 1.2.0 2023-09-24 [2] CRAN (R 4.6.0)
## pROC 1.19.0.1 2025-07-31 [2] CRAN (R 4.6.0)
## processx 3.8.6 2025-02-21 [2] CRAN (R 4.6.0)
## prodlim 2025.04.28 2025-04-28 [2] CRAN (R 4.6.0)
## profvis 0.4.0 2024-09-20 [2] CRAN (R 4.6.0)
## progress 1.2.3 2023-12-06 [2] CRAN (R 4.6.0)
## progressr 0.18.0 2025-11-06 [2] CRAN (R 4.6.0)
## promises 1.5.0 2025-11-01 [2] CRAN (R 4.6.0)
## proxy 0.4-29 2025-12-29 [2] CRAN (R 4.6.0)
## ps 1.9.1 2025-04-12 [2] CRAN (R 4.6.0)
## psych 2.5.6 2025-06-23 [2] CRAN (R 4.6.0)
## pulsar 0.3.11 2023-09-24 [2] CRAN (R 4.6.0)
## purrr 1.2.1 2026-01-09 [2] CRAN (R 4.6.0)
## pwalign 1.7.0 2025-10-31 [2] Bioconductor 3.23 (R 4.6.0)
## qap 0.1-2 2022-06-27 [2] CRAN (R 4.6.0)
## qgraph 1.9.8 2023-11-03 [2] CRAN (R 4.6.0)
## quadprog 1.5-8 2019-11-20 [2] CRAN (R 4.6.0)
## quantmod 0.4.28 2025-06-19 [2] CRAN (R 4.6.0)
## quantreg 6.1 2025-03-10 [2] CRAN (R 4.6.0)
## quarto 1.5.1 2025-09-04 [2] CRAN (R 4.6.0)
## R6 2.6.1 2025-02-15 [2] CRAN (R 4.6.0)
## ragg 1.5.0 2025-09-02 [2] CRAN (R 4.6.0)
## randomcoloR 1.1.0.1 2019-11-24 [2] CRAN (R 4.6.0)
## randomForest 4.7-1.2 2024-09-22 [2] CRAN (R 4.6.0)
## ranger 0.18.0 2026-01-16 [2] CRAN (R 4.6.0)
## rappdirs 0.3.4 2026-01-17 [2] CRAN (R 4.6.0)
## rbibutils 2.4.1 2026-01-21 [2] CRAN (R 4.6.0)
## rcmdcheck 1.4.0 2021-09-27 [2] CRAN (R 4.6.0)
## RColorBrewer 1.1-3 2022-04-03 [2] CRAN (R 4.6.0)
## Rcpp 1.1.1 2026-01-10 [2] CRAN (R 4.6.0)
## RcppAnnoy 0.0.23 2026-01-12 [2] CRAN (R 4.6.0)
## RcppArmadillo 15.2.3-1 2025-12-17 [2] CRAN (R 4.6.0)
## RcppEigen 0.3.4.0.2 2024-08-24 [2] CRAN (R 4.6.0)
## RcppGSL 0.3.13 2023-01-13 [2] CRAN (R 4.6.0)
## RcppML 0.3.7 2021-09-21 [2] CRAN (R 4.6.0)
## RcppNumerical 0.6-0 2023-09-06 [2] CRAN (R 4.6.0)
## RcppParallel 5.1.11-1 2025-08-27 [2] CRAN (R 4.6.0)
## RcppProgress 0.4.2 2020-02-06 [2] CRAN (R 4.6.0)
## RcppTOML 0.2.3 2025-03-08 [2] CRAN (R 4.6.0)
## RcppZiggurat 0.1.8 2025-03-30 [2] CRAN (R 4.6.0)
## Rdpack 2.6.5 2026-01-23 [2] CRAN (R 4.6.0)
## reactable 0.4.5 2025-12-01 [2] CRAN (R 4.6.0)
## reactR 0.6.1 2024-09-14 [2] CRAN (R 4.6.0)
## readr 2.1.6 2025-11-14 [2] CRAN (R 4.6.0)
## readxl 1.4.5 2025-03-07 [2] CRAN (R 4.6.0)
## rebook 1.21.0 2025-11-02 [2] Bioconductor 3.23 (R 4.6.0)
## recipes 1.3.1 2025-05-21 [2] CRAN (R 4.6.0)
## reformulas 0.4.3.1 2026-01-08 [2] CRAN (R 4.6.0)
## registry 0.5-1 2019-03-05 [2] CRAN (R 4.6.0)
## rematch 2.0.0 2023-08-30 [2] CRAN (R 4.6.0)
## rematch2 2.1.2 2020-05-01 [2] CRAN (R 4.6.0)
## remotes 2.5.0 2024-03-17 [2] CRAN (R 4.6.0)
## renv 1.1.7 2026-01-27 [2] CRAN (R 4.6.0)
## reprex 2.1.1 2024-07-06 [2] CRAN (R 4.6.0)
## reshape2 1.4.5 2025-11-12 [2] CRAN (R 4.6.0)
## reticulate 1.44.1 2025-11-14 [2] CRAN (R 4.6.0)
## Rfast 2.1.5.2 2025-10-10 [2] CRAN (R 4.6.0)
## rgl 1.3.31 2025-11-14 [2] CRAN (R 4.6.0)
## rhdf5 2.55.12 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## rhdf5filters 1.23.3 2025-12-07 [2] Bioconductor 3.23 (R 4.6.0)
## Rhdf5lib 1.33.0 2025-10-30 [2] Bioconductor 3.23 (R 4.6.0)
## Rhtslib 3.7.0 2025-10-30 [2] Bioconductor 3.23 (R 4.6.0)
## rJava 1.0-14 2026-01-20 [2] CRAN (R 4.6.0)
## rjson 0.2.23 2024-09-16 [2] CRAN (R 4.6.0)
## rlang 1.1.7 2026-01-09 [2] CRAN (R 4.6.0)
## rmarkdown 2.30 2025-09-28 [2] CRAN (R 4.6.0)
## Rmpfr 1.1-2 2025-10-27 [2] CRAN (R 4.6.0)
## rms 8.1-0 2025-10-14 [2] CRAN (R 4.6.0)
## rmutil 1.1.10 2022-10-27 [2] CRAN (R 4.6.0)
## rngtools 1.5.2 2021-09-20 [2] CRAN (R 4.6.0)
## robustbase 0.99-6 2025-09-04 [2] CRAN (R 4.6.0)
## ROCR 1.0-12 2026-01-23 [2] CRAN (R 4.6.0)
## rootSolve 1.8.2.4 2023-09-21 [2] CRAN (R 4.6.0)
## roxygen2 7.3.3 2025-09-03 [2] CRAN (R 4.6.0)
## rpart 4.1.24 2025-01-07 [3] CRAN (R 4.6.0)
## rprojroot 2.1.1 2025-08-26 [2] CRAN (R 4.6.0)
## Rsamtools 2.27.0 2025-10-31 [2] Bioconductor 3.23 (R 4.6.0)
## RSpectra 0.16-2 2024-07-18 [2] CRAN (R 4.6.0)
## RSQLite 2.4.5 2025-11-30 [2] CRAN (R 4.6.0)
## rstatix 0.7.3 2025-10-18 [2] CRAN (R 4.6.0)
## rstudioapi 0.18.0 2026-01-16 [2] CRAN (R 4.6.0)
## rsvd 1.0.5 2021-04-16 [2] CRAN (R 4.6.0)
## Rtsne 0.17 2023-12-07 [2] CRAN (R 4.6.0)
## rversions 3.0.0 2025-10-09 [2] CRAN (R 4.6.0)
## rvest 1.0.5 2025-08-29 [2] CRAN (R 4.6.0)
## S4Arrays 1.11.1 2025-11-25 [2] Bioconductor 3.23 (R 4.6.0)
## S4Vectors 0.49.0 2025-10-30 [2] Bioconductor 3.23 (R 4.6.0)
## S7 0.2.1 2025-11-14 [2] CRAN (R 4.6.0)
## sandwich 3.1-1 2024-09-15 [2] CRAN (R 4.6.0)
## sass 0.4.10 2025-04-11 [2] CRAN (R 4.6.0)
## ScaledMatrix 1.19.0 2025-10-31 [2] Bioconductor 3.23 (R 4.6.0)
## scales 1.4.0 2025-04-24 [2] CRAN (R 4.6.0)
## scater 1.39.2 2026-01-13 [2] Bioconductor 3.23 (R 4.6.0)
## scatterplot3d 0.3-44 2023-05-05 [2] CRAN (R 4.6.0)
## scs 3.2.7 2025-04-14 [2] CRAN (R 4.6.0)
## scuttle 1.21.0 2025-11-03 [2] Bioconductor 3.23 (R 4.6.0)
## sechm 1.19.0 2025-10-31 [2] Bioconductor 3.23 (R 4.6.0)
## selectr 0.5-1 2025-12-17 [2] CRAN (R 4.6.0)
## Seqinfo 1.1.0 2025-10-31 [2] Bioconductor 3.23 (R 4.6.0)
## seriation 1.5.8 2025-08-20 [2] CRAN (R 4.6.0)
## sessioninfo 1.2.3 2025-02-05 [2] CRAN (R 4.6.0)
## shadowtext 0.1.6 2025-08-24 [2] CRAN (R 4.6.0)
## shape 1.4.6.1 2024-02-23 [2] CRAN (R 4.6.0)
## shiny 1.12.1 2025-12-09 [2] CRAN (R 4.6.0)
## shinyjs 2.1.1 2026-01-15 [2] CRAN (R 4.6.0)
## ShortRead 1.69.2 2025-11-05 [2] Bioconductor 3.23 (R 4.6.0)
## SingleCellExperiment 1.33.0 2025-11-03 [2] Bioconductor 3.23 (R 4.6.0)
## sitmo 2.0.2 2021-10-13 [2] CRAN (R 4.6.0)
## smoof 1.6.0.3 2023-03-10 [2] CRAN (R 4.6.0)
## sn 2.1.2 2026-01-25 [2] CRAN (R 4.6.0)
## snow 0.4-4 2021-10-27 [2] CRAN (R 4.6.0)
## SnowballC 0.7.1 2023-04-25 [2] CRAN (R 4.6.0)
## sourcetools 0.1.7-1 2023-02-01 [2] CRAN (R 4.6.0)
## sp 2.2-0 2025-02-01 [2] CRAN (R 4.6.0)
## SparseArray 1.11.10 2025-12-16 [2] Bioconductor 3.23 (R 4.6.0)
## SparseM 1.84-2 2024-07-17 [2] CRAN (R 4.6.0)
## sparseMatrixStats 1.23.0 2025-10-30 [2] Bioconductor 3.23 (R 4.6.0)
## sparsevctrs 0.3.6 2026-01-27 [2] CRAN (R 4.6.0)
## spatial 7.3-18 2025-01-01 [3] CRAN (R 4.6.0)
## SpiecEasi 1.99.0 2026-01-29 [2] Github (zdk123/SpiecEasi@faed6a4)
## splines 4.6.0 2026-01-26 [3] local
## SPRING 1.0.4 2026-01-29 [2] Github (GraceYoon/SPRING@3d641a4)
## SQUAREM 2021.1 2021-01-13 [2] CRAN (R 4.6.0)
## stable 1.1.6 2022-03-02 [2] CRAN (R 4.6.0)
## stabledist 0.7-2 2024-08-17 [2] CRAN (R 4.6.0)
## statip 0.2.3 2019-11-17 [2] CRAN (R 4.6.0)
## statmod 1.5.1 2025-10-09 [2] CRAN (R 4.6.0)
## stats * 4.6.0 2026-01-26 [3] local
## stats4 4.6.0 2026-01-26 [3] local
## stringi 1.8.7 2025-03-27 [2] CRAN (R 4.6.0)
## stringr 1.6.0 2025-11-04 [2] CRAN (R 4.6.0)
## SummarizedExperiment 1.41.0 2025-10-31 [2] Bioconductor 3.23 (R 4.6.0)
## SuperLearner 2.0-40 2025-12-21 [2] CRAN (R 4.6.0)
## survival 3.8-6 2026-01-16 [3] CRAN (R 4.6.0)
## svUnit 1.0.8 2025-08-26 [2] CRAN (R 4.6.0)
## sys 3.4.3 2024-10-04 [2] CRAN (R 4.6.0)
## systemfonts 1.3.1 2025-10-01 [2] CRAN (R 4.6.0)
## tcltk 4.6.0 2026-01-26 [3] local
## tensorA 0.36.2.1 2023-12-13 [2] CRAN (R 4.6.0)
## testthat 3.3.2 2026-01-11 [2] CRAN (R 4.6.0)
## textshaping 1.0.4 2025-10-10 [2] CRAN (R 4.6.0)
## TH.data 1.1-5 2025-11-17 [2] CRAN (R 4.6.0)
## tibble 3.3.1 2026-01-11 [2] CRAN (R 4.6.0)
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## tidygraph 1.3.1 2024-01-30 [2] CRAN (R 4.6.0)
## tidyr 1.3.2 2025-12-19 [2] CRAN (R 4.6.0)
## tidyselect 1.2.1 2024-03-11 [2] CRAN (R 4.6.0)
## tidySingleCellExperiment 1.21.0 2025-11-03 [2] Bioconductor 3.23 (R 4.6.0)
## tidytext 0.4.3 2025-07-25 [2] CRAN (R 4.6.0)
## tidytree 0.4.7 2026-01-08 [2] CRAN (R 4.6.0)
## tidyverse 2.0.0 2023-02-22 [2] CRAN (R 4.6.0)
## timechange 0.3.0 2024-01-18 [2] CRAN (R 4.6.0)
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## tinytex 0.58 2025-11-19 [2] CRAN (R 4.6.0)
## tokenizers 0.3.0 2022-12-22 [2] CRAN (R 4.6.0)
## tools 4.6.0 2026-01-26 [3] local
## treeio 1.35.0 2025-10-30 [2] Bioconductor 3.23 (R 4.6.0)
## TreeSummarizedExperiment 2.19.0 2025-11-03 [2] Bioconductor 3.23 (R 4.6.0)
## truncnorm 1.0-9 2023-03-20 [2] CRAN (R 4.6.0)
## tseries 0.10-59 2026-01-09 [2] CRAN (R 4.6.0)
## TSP 1.2.6 2025-11-27 [2] CRAN (R 4.6.0)
## TTR 0.24.4 2023-11-28 [2] CRAN (R 4.6.0)
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## ucminf 1.2.2 2024-06-24 [2] CRAN (R 4.6.0)
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## utils * 4.6.0 2026-01-26 [3] local
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## V8 8.0.1 2025-10-10 [2] CRAN (R 4.6.0)
## vctrs 0.7.1 2026-01-23 [2] CRAN (R 4.6.0)
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## zoo 1.8-15 2025-12-15 [2] CRAN (R 4.6.0)
##
## [1] /tmp/Rtmpiq1evT/Rinstb23e4f5aa
## [2] /usr/local/lib/R/site-library
## [3] /usr/local/lib/R/library
## * ── Packages attached to the search path.
##
## ─ Python configuration ────────────────────────────────────────────────────
## Python is not available
##
## ───────────────────────────────────────────────────────────────────────────F.3 Other information
- Header image: iStock / ClaudioVentrella