Orchestrating Microbiome Analysis
Source Code
Browse version
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Machine Learning & Statistical Modeling
25
Statistical Modeling
Overview
Introduction
1
Microbiome Data Science in Bioconductor
2
miaverse
Data containers & Importing
3
Data Containers
4
Import
5
Convert & Export
Data Manipulation
6
Data Wrangling
7
Transformation
8
Taxonomic Information
9
Agglomeration
Exploration & QC
10
Exploration & Quality Control
11
Community Composition
Diversity & Similarity
12
Community Diversity
13
Community Similarity
14
Community Typing
Association
15
Differential Abundance
16
Correlation
17
Microbe Set Enrichment Analysis (MSEA)
18
Meta-analyses
Networks
19
Network Learning & Analysis
20
Network Comparison
Multiomics
21
Cross-association
22
Ordination-based Multiassay Analysis
23
Multi-omics Integration
Machine Learning & Statistical Modeling
24
Machine Learning
25
Statistical Modeling
Workflows
26
Introductory
27
Introductory (French)
28
Introductory (Dutch)
Training
29
Training
30
Exercises
Support & Resources
31
Support
32
Resources
33
Contributions
Appendices
A
Extra material
B
Visualization
C
Technical info
Machine Learning & Statistical Modeling
25
Statistical Modeling
25
Statistical Modeling
This chapter will include introduction to statistical modeling in a future version.
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Machine Learning
26
Introductory